STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB01712.1RNA polymerase sigma-70 factor, ECF subfamily. (169 aa)    
Predicted Functional Partners:
SFB01730.1
Hypothetical protein.
       0.781
SFB54378.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.723
SFB02888.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.713
SFA97766.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.711
SFB06695.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.707
SFB57345.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.699
SFB17193.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.691
SFB38059.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.691
SFB47776.1
RNA polymerase, sigma subunit, SigW; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.688
SFB51423.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.670
Your Current Organism:
Algoriphagus aquimarinus
NCBI taxonomy Id: 237018
Other names: A. aquimarinus, Algoriphagus aquimarinus Nedashkovskaya et al. 2004, CCUG 47101, DSM 23399, KMM 3958, LMG 21971, LMG:21971
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.