STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA96528.1CRP/FNR family transcriptional regulator, anaerobic regulatory protein. (237 aa)    
Predicted Functional Partners:
SFB56914.1
TolB amino-terminal domain-containing protein.
   
 0.878
SFA80499.1
Glutamate synthase (NADH) large subunit.
    
 0.875
SFB43933.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
 
 0.821
SFA98262.1
PAS domain S-box-containing protein.
  
 0.764
SFB01945.1
CRP/FNR family transcriptional regulator, anaerobic regulatory protein.
  
  
  0.731
SFA96547.1
Rhodanese-related sulfurtransferase.
  
    0.657
SFA96503.1
Type I restriction enzyme R protein N terminus (HSDR_N).
       0.603
SFA71579.1
Glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
  0.556
SFB58182.1
Adenylate cyclase, class 3.
   
 0.554
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.542
Your Current Organism:
Algoriphagus aquimarinus
NCBI taxonomy Id: 237018
Other names: A. aquimarinus, Algoriphagus aquimarinus Nedashkovskaya et al. 2004, CCUG 47101, DSM 23399, KMM 3958, LMG 21971, LMG:21971
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