STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB08720.1Predicted dehydrogenase. (333 aa)    
Predicted Functional Partners:
SFB08743.1
Predicted acyltransferase.
 
     0.762
SFB55275.1
Lysophospholipase L1.
  
     0.727
SFB08764.1
Predicted dehydrogenase.
 
     0.726
SFB53469.1
Protein of unknown function.
  
     0.689
SFA97390.1
Protein of unknown function.
  
     0.681
SFB40808.1
Sugar phosphate isomerase/epimerase.
  
    0.659
SFB56295.1
Sugar phosphate isomerase/epimerase.
  
    0.616
SFB08786.1
N-acetylglucosamine-6-phosphate deacetylase.
 
     0.614
SFB19321.1
Hypothetical protein.
  
     0.589
SFB27260.1
Hypothetical protein.
  
     0.589
Your Current Organism:
Algoriphagus aquimarinus
NCBI taxonomy Id: 237018
Other names: A. aquimarinus, Algoriphagus aquimarinus Nedashkovskaya et al. 2004, CCUG 47101, DSM 23399, KMM 3958, LMG 21971, LMG:21971
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.