STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB11860.1Catechol 2,3-dioxygenase. (353 aa)    
Predicted Functional Partners:
SFB11878.1
Transferase 2, rSAM/selenodomain-associated.
       0.791
SFB11897.1
Hypothetical protein.
       0.781
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
  
 
 0.632
SFB18725.1
Heterodimeric methylmalonyl-CoA mutase large subunit precursor.
    
 0.581
SFB18752.1
Heterodimeric methylmalonyl-CoA mutase small subunit.
    
 0.581
SFB40881.1
1-acyl-sn-glycerol-3-phosphate acyltransferases.
  
     0.551
SFA77539.1
Methyltransferase domain-containing protein.
  
     0.546
SFA80960.1
Hydroxyacylglutathione hydrolase.
   
 
  0.545
SFB11915.1
Hypothetical protein.
       0.512
SFB11935.1
Radical SAM/Cys-rich domain-containing protein.
       0.512
Your Current Organism:
Algoriphagus aquimarinus
NCBI taxonomy Id: 237018
Other names: A. aquimarinus, Algoriphagus aquimarinus Nedashkovskaya et al. 2004, CCUG 47101, DSM 23399, KMM 3958, LMG 21971, LMG:21971
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.