STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB07166.1Hypothetical protein. (121 aa)    
Predicted Functional Partners:
SFB07139.1
Putative zinc finger/helix-turn-helix protein, YgiT family.
 
     0.950
SFB07113.1
Hypothetical protein.
       0.620
SFB41648.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.474
SFB27366.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.452
SFB46374.1
Starch-binding associating with outer membrane.
  
     0.450
SFB27388.1
Starch-binding associating with outer membrane.
  
     0.444
SFB07189.1
Hypothetical protein.
       0.440
SFB10670.1
Starch-binding associating with outer membrane.
  
     0.438
SFB43176.1
Hypothetical protein.
  
     0.430
SFB10647.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.426
Your Current Organism:
Algoriphagus aquimarinus
NCBI taxonomy Id: 237018
Other names: A. aquimarinus, Algoriphagus aquimarinus Nedashkovskaya et al. 2004, CCUG 47101, DSM 23399, KMM 3958, LMG 21971, LMG:21971
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.