STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB17220.1TonB-linked outer membrane protein, SusC/RagA family. (1160 aa)    
Predicted Functional Partners:
SFB17235.1
Starch-binding associating with outer membrane.
 
 
   0.960
SFA78774.1
Starch-binding associating with outer membrane.
 
 
   0.838
SFB27508.1
Starch-binding associating with outer membrane.
 
 
   0.828
SFB06763.1
Starch-binding associating with outer membrane.
  
 
   0.763
SFB46374.1
Starch-binding associating with outer membrane.
 
 
   0.739
SFB09761.1
CarboxypepD_reg-like domain-containing protein.
  
 
   0.732
SFB10174.1
Starch-binding associating with outer membrane.
  
 
   0.727
SFB27423.1
Starch-binding associating with outer membrane.
  
 
   0.727
SFB56359.1
Starch-binding associating with outer membrane.
  
 
   0.721
SFB52388.1
Hypothetical protein.
  
 
   0.718
Your Current Organism:
Algoriphagus aquimarinus
NCBI taxonomy Id: 237018
Other names: A. aquimarinus, Algoriphagus aquimarinus Nedashkovskaya et al. 2004, CCUG 47101, DSM 23399, KMM 3958, LMG 21971, LMG:21971
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.