STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB26160.1DNA-binding transcriptional regulator YhcF, GntR family. (344 aa)    
Predicted Functional Partners:
SFB26140.1
Sugar (pentulose or hexulose) kinase.
 
 
 
 0.950
SFA80499.1
Glutamate synthase (NADH) large subunit.
   
 
 0.884
SFB26179.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
   0.847
SFB26082.1
L-lactate dehydrogenase complex protein LldG.
 
 
   0.689
SFA79912.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
   
 
 0.667
SFB26099.1
L-lactate dehydrogenase complex protein LldF.
   
   0.651
SFB58542.1
Signal transduction histidine kinase.
  
  
 0.612
SFB37918.1
L-rhamnose isomerase / sugar isomerase.
 
     0.560
SFB37978.1
Glycosyl hydrolases family 2, sugar binding domain; Belongs to the glycosyl hydrolase 2 family.
 
     0.546
SFB26204.1
L-rhamnose isomerase / sugar isomerase.
 
     0.543
Your Current Organism:
Algoriphagus aquimarinus
NCBI taxonomy Id: 237018
Other names: A. aquimarinus, Algoriphagus aquimarinus Nedashkovskaya et al. 2004, CCUG 47101, DSM 23399, KMM 3958, LMG 21971, LMG:21971
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.