STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB26398.1Peptidase family M28. (325 aa)    
Predicted Functional Partners:
cysS
cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.791
SFB49045.1
Hypothetical protein.
  
     0.613
SFA72353.1
BadF-type ATPase.
  
     0.538
SFA91742.1
Gliding motility-associated protein GldM.
  
     0.491
SFA75800.1
LPS export ABC transporter protein LptC.
  
     0.490
SFB44130.1
Helix-hairpin-helix motif-containing protein.
  
     0.486
SFB26362.1
Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
       0.461
SFB26381.1
Transcriptional regulator, LacI family.
       0.455
SFA73871.1
AraC-type DNA-binding protein.
  
     0.446
SFB36813.1
Phosphoribosylanthranilate isomerase; Belongs to the TrpF family.
  
     0.410
Your Current Organism:
Algoriphagus aquimarinus
NCBI taxonomy Id: 237018
Other names: A. aquimarinus, Algoriphagus aquimarinus Nedashkovskaya et al. 2004, CCUG 47101, DSM 23399, KMM 3958, LMG 21971, LMG:21971
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