STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB27589.1L-fuconate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (416 aa)    
Predicted Functional Partners:
SFB33171.1
L-fuconolactonase.
 
  
 0.730
SFB27636.1
Predicted dehydrogenase.
 
     0.551
SFB27571.1
Hypothetical protein.
 
     0.531
SFA71142.1
Sugar lactone lactonase YvrE.
 
  
 0.524
SFB27604.1
Hypothetical protein.
 
     0.512
SFB49144.1
4-hydroxyproline epimerase; Belongs to the proline racemase family.
  
  
 0.495
SFB46144.1
O-succinylbenzoic acid--CoA ligase.
  
 
  0.472
SFB53528.1
FMN-dependent dehydrogenase.
 
  
 0.461
SFB27619.1
Protein of unknown function.
       0.445
SFB27655.1
Arylsulfatase A.
       0.445
Your Current Organism:
Algoriphagus aquimarinus
NCBI taxonomy Id: 237018
Other names: A. aquimarinus, Algoriphagus aquimarinus Nedashkovskaya et al. 2004, CCUG 47101, DSM 23399, KMM 3958, LMG 21971, LMG:21971
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.