STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB33151.12-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway). (286 aa)    
Predicted Functional Partners:
SFB33171.1
L-fuconolactonase.
 
     0.851
SFB33138.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  0.808
SFB33202.1
L-fucose dehydrogenase.
 
  0.728
SFB19339.1
FAD/FMN-containing dehydrogenase.
  
 
  0.662
SFB53505.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
  0.654
SFB33220.1
MFS transporter, FHS family, L-fucose permease.
 
     0.644
SFB33237.1
L-rhamnose mutarotase.
 
     0.628
SFB33190.1
Predicted nuclease of restriction endonuclease-like (RecB) superfamily, DUF1016 family.
       0.596
SFB23885.1
Homogentisate 1,2-dioxygenase.
  
  
 0.593
SFB33252.1
Acetyl esterase/lipase.
  
    0.457
Your Current Organism:
Algoriphagus aquimarinus
NCBI taxonomy Id: 237018
Other names: A. aquimarinus, Algoriphagus aquimarinus Nedashkovskaya et al. 2004, CCUG 47101, DSM 23399, KMM 3958, LMG 21971, LMG:21971
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.