STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB44816.1Helix-turn-helix domain-containing protein. (91 aa)    
Predicted Functional Partners:
SFA96359.1
Integrase core domain-containing protein.
  
    0.773
SFB21581.1
Integrase core domain-containing protein.
  
    0.773
SFB23676.1
Integrase core domain-containing protein.
  
    0.773
SFB48671.1
Integrase core domain-containing protein.
  
    0.773
SFB56971.1
Integrase core domain-containing protein.
  
    0.773
SFB59362.1
Integrase core domain-containing protein.
  
    0.773
SFB60310.1
Integrase core domain-containing protein.
  
    0.773
SFA81907.1
Integrase core domain-containing protein.
  
    0.718
SFB61468.1
Integrase core domain-containing protein.
  
    0.697
SFB60643.1
Integrase core domain-containing protein.
  
    0.677
Your Current Organism:
Algoriphagus aquimarinus
NCBI taxonomy Id: 237018
Other names: A. aquimarinus, Algoriphagus aquimarinus Nedashkovskaya et al. 2004, CCUG 47101, DSM 23399, KMM 3958, LMG 21971, LMG:21971
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.