Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFA92444.1 | SFB18377.1 | SAMN04489723_102333 | SAMN04489723_105145 | Beta-barrel assembly machine subunit BamA. | Protein of unknown function. | 0.725 |
SFA92444.1 | SFB19695.1 | SAMN04489723_102333 | SAMN04489723_105212 | Beta-barrel assembly machine subunit BamA. | Hypothetical protein. | 0.694 |
SFA92444.1 | SFB48090.1 | SAMN04489723_102333 | SAMN04489723_112109 | Beta-barrel assembly machine subunit BamA. | RNA polymerase-binding transcription factor DksA. | 0.641 |
SFA92444.1 | SFB56136.1 | SAMN04489723_102333 | SAMN04489723_12042 | Beta-barrel assembly machine subunit BamA. | DNA-directed RNA polymerase, subunit K/omega. | 0.668 |
SFA92444.1 | SFB59156.1 | SAMN04489723_102333 | SAMN04489723_12549 | Beta-barrel assembly machine subunit BamA. | Protein of unknown function. | 0.761 |
SFA92444.1 | rpoC | SAMN04489723_102333 | SAMN04489723_10279 | Beta-barrel assembly machine subunit BamA. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.441 |
SFB08200.1 | SFB48090.1 | SAMN04489723_104108 | SAMN04489723_112109 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNA polymerase-binding transcription factor DksA. | 0.680 |
SFB08200.1 | SFB56136.1 | SAMN04489723_104108 | SAMN04489723_12042 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, subunit K/omega. | 0.992 |
SFB08200.1 | rpoA | SAMN04489723_104108 | SAMN04489723_10247 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.997 |
SFB08200.1 | rpoB | SAMN04489723_104108 | SAMN04489723_10280 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.996 |
SFB08200.1 | rpoC | SAMN04489723_104108 | SAMN04489723_10279 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.996 |
SFB18377.1 | SFA92444.1 | SAMN04489723_105145 | SAMN04489723_102333 | Protein of unknown function. | Beta-barrel assembly machine subunit BamA. | 0.725 |
SFB18377.1 | SFB19695.1 | SAMN04489723_105145 | SAMN04489723_105212 | Protein of unknown function. | Hypothetical protein. | 0.548 |
SFB18377.1 | SFB48090.1 | SAMN04489723_105145 | SAMN04489723_112109 | Protein of unknown function. | RNA polymerase-binding transcription factor DksA. | 0.623 |
SFB18377.1 | SFB56136.1 | SAMN04489723_105145 | SAMN04489723_12042 | Protein of unknown function. | DNA-directed RNA polymerase, subunit K/omega. | 0.743 |
SFB18377.1 | SFB59156.1 | SAMN04489723_105145 | SAMN04489723_12549 | Protein of unknown function. | Protein of unknown function. | 0.690 |
SFB19695.1 | SFA92444.1 | SAMN04489723_105212 | SAMN04489723_102333 | Hypothetical protein. | Beta-barrel assembly machine subunit BamA. | 0.694 |
SFB19695.1 | SFB18377.1 | SAMN04489723_105212 | SAMN04489723_105145 | Hypothetical protein. | Protein of unknown function. | 0.548 |
SFB19695.1 | SFB48090.1 | SAMN04489723_105212 | SAMN04489723_112109 | Hypothetical protein. | RNA polymerase-binding transcription factor DksA. | 0.582 |
SFB19695.1 | SFB56136.1 | SAMN04489723_105212 | SAMN04489723_12042 | Hypothetical protein. | DNA-directed RNA polymerase, subunit K/omega. | 0.589 |
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