STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB50044.1Protein of unknown function. (108 aa)    
Predicted Functional Partners:
SFB50031.1
Bacteroides conjugation system ATPase, TraG family.
 
     0.950
SFB50020.1
Hypothetical protein.
 
     0.948
SFB50011.1
Hypothetical protein.
 
     0.944
SFB50002.1
Hypothetical protein.
 
     0.941
SFB50053.1
Protein of unknown function.
 
     0.941
SFB49990.1
Bacteroides conjugative transposon TraJ protein.
 
     0.922
SFB49980.1
Bacteroides conjugative transposon TraK protein.
 
     0.920
SFB49969.1
Bacteroides conjugative transposon TraM protein.
 
     0.856
SFB49960.1
Bacteroides conjugative transposon TraN protein.
 
     0.851
SFB49950.1
Hypothetical protein.
 
     0.834
Your Current Organism:
Algoriphagus aquimarinus
NCBI taxonomy Id: 237018
Other names: A. aquimarinus, Algoriphagus aquimarinus Nedashkovskaya et al. 2004, CCUG 47101, DSM 23399, KMM 3958, LMG 21971, LMG:21971
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.