STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB51195.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (231 aa)    
Predicted Functional Partners:
SFB43933.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
 0.999
SFA98262.1
PAS domain S-box-containing protein.
  
 0.987
SFB41413.1
PAS domain S-box-containing protein.
 
 0.977
SFB51190.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
  0.971
SFB53301.1
Signal transduction histidine kinase.
 
 
 0.963
SFB54177.1
Signal transduction histidine kinase.
 0.952
SFB56763.1
PAS domain S-box-containing protein.
 
0.948
SFB45858.1
PAS domain S-box-containing protein.
 
0.947
SFB01907.1
HAMP domain-containing protein.
 0.903
SFB18172.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 
  0.899
Your Current Organism:
Algoriphagus aquimarinus
NCBI taxonomy Id: 237018
Other names: A. aquimarinus, Algoriphagus aquimarinus Nedashkovskaya et al. 2004, CCUG 47101, DSM 23399, KMM 3958, LMG 21971, LMG:21971
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