STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB52290.1Starch-binding associating with outer membrane. (593 aa)    
Predicted Functional Partners:
SFB52297.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.946
SFB36323.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.844
SFB48766.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.764
SFA78752.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.757
SFA97811.1
Subtilase family protein.
  
  0.750
SFB10188.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.730
SFB36314.1
Starch-binding associating with outer membrane.
  
     0.721
SFB32192.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.715
SFB31801.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.708
SFB32165.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.703
Your Current Organism:
Algoriphagus aquimarinus
NCBI taxonomy Id: 237018
Other names: A. aquimarinus, Algoriphagus aquimarinus Nedashkovskaya et al. 2004, CCUG 47101, DSM 23399, KMM 3958, LMG 21971, LMG:21971
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.