Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFA76074.1 | SFB44250.1 | SAMN04489723_101208 | SAMN04489723_110112 | Shikimate dehydrogenase. | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.950 |
SFA76074.1 | SFB44257.1 | SAMN04489723_101208 | SAMN04489723_110113 | Shikimate dehydrogenase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.915 |
SFA76074.1 | SFB44270.1 | SAMN04489723_101208 | SAMN04489723_110114 | Shikimate dehydrogenase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.973 |
SFA76074.1 | SFB51609.1 | SAMN04489723_101208 | SAMN04489723_11583 | Shikimate dehydrogenase. | 3-dehydroquinate synthase. | 0.772 |
SFA76074.1 | aroC | SAMN04489723_101208 | SAMN04489723_11354 | Shikimate dehydrogenase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.924 |
SFA76074.1 | aroK | SAMN04489723_101208 | SAMN04489723_1164 | Shikimate dehydrogenase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.965 |
SFA76074.1 | aroQ | SAMN04489723_101208 | SAMN04489723_102241 | Shikimate dehydrogenase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.962 |
SFB44250.1 | SFA76074.1 | SAMN04489723_110112 | SAMN04489723_101208 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Shikimate dehydrogenase. | 0.950 |
SFB44250.1 | SFB44257.1 | SAMN04489723_110112 | SAMN04489723_110113 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.995 |
SFB44250.1 | SFB44270.1 | SAMN04489723_110112 | SAMN04489723_110114 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.994 |
SFB44250.1 | SFB44306.1 | SAMN04489723_110112 | SAMN04489723_110118 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Prephenate dehydrogenase. | 0.976 |
SFB44250.1 | SFB51609.1 | SAMN04489723_110112 | SAMN04489723_11583 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 3-dehydroquinate synthase. | 0.981 |
SFB44250.1 | aroC | SAMN04489723_110112 | SAMN04489723_11354 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.991 |
SFB44250.1 | aroK | SAMN04489723_110112 | SAMN04489723_1164 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.971 |
SFB44250.1 | aroQ | SAMN04489723_110112 | SAMN04489723_102241 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.769 |
SFB44257.1 | SFA76074.1 | SAMN04489723_110113 | SAMN04489723_101208 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Shikimate dehydrogenase. | 0.915 |
SFB44257.1 | SFB44250.1 | SAMN04489723_110113 | SAMN04489723_110112 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.995 |
SFB44257.1 | SFB44270.1 | SAMN04489723_110113 | SAMN04489723_110114 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.995 |
SFB44257.1 | SFB44306.1 | SAMN04489723_110113 | SAMN04489723_110118 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Prephenate dehydrogenase. | 0.760 |
SFB44257.1 | SFB51609.1 | SAMN04489723_110113 | SAMN04489723_11583 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 3-dehydroquinate synthase. | 0.838 |
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