STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB53989.1Hypothetical protein. (378 aa)    
Predicted Functional Partners:
SFB53982.1
Histidinol-phosphate aminotransferase.
 
     0.936
SFA98790.1
Allosteric NADP-dependent malic enzyme.
  
  
 0.779
SFB53994.1
Hypothetical protein.
 
     0.589
SFB53978.1
Hypothetical protein.
       0.578
SFB53973.1
Starch-binding associating with outer membrane.
 
     0.565
SFB53967.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.523
SFB37963.1
Purine-cytosine permease.
  
     0.496
SFA92970.1
Hypothetical protein.
  
     0.451
SFB56164.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.443
SFB40675.1
Protein of unknown function.
  
     0.429
Your Current Organism:
Algoriphagus aquimarinus
NCBI taxonomy Id: 237018
Other names: A. aquimarinus, Algoriphagus aquimarinus Nedashkovskaya et al. 2004, CCUG 47101, DSM 23399, KMM 3958, LMG 21971, LMG:21971
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.