STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB58134.1Proline 4-hydroxylase (includes Rps23 Pro-64 3,4-dihydroxylase Tpa1), contains SM-20 domain. (259 aa)    
Predicted Functional Partners:
SFB58143.1
Hypothetical protein.
       0.773
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
   0.681
SFB59584.1
Hypothetical protein.
   
   0.681
SFB58151.1
Polysaccharide transporter, PST family.
       0.526
SFB58159.1
Chain length determinant protein.
       0.512
SFB58165.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
       0.512
SFB58127.1
Hypothetical protein.
       0.498
SFB58119.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.470
SFB58106.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.453
SFB58112.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.453
Your Current Organism:
Algoriphagus aquimarinus
NCBI taxonomy Id: 237018
Other names: A. aquimarinus, Algoriphagus aquimarinus Nedashkovskaya et al. 2004, CCUG 47101, DSM 23399, KMM 3958, LMG 21971, LMG:21971
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.