STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN86518.1ATP-binding cassette, subfamily B. (673 aa)    
Predicted Functional Partners:
SDN86490.1
ATP-binding cassette, subfamily B.
 
    
0.828
SDN86549.1
Trypsin-like peptidase domain-containing protein.
   
  0.792
SDN41909.1
Iron complex transport system ATP-binding protein.
 
   
0.663
SDN86456.1
Hypothetical protein.
       0.651
sigI
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; Belongs to the sigma-70 factor family. SigI subfamily.
       0.526
SDN86611.1
Hypothetical protein.
       0.526
SDN40642.1
ATP-binding cassette, subfamily B.
 
 
 
0.517
SDM88338.1
YqxM protein.
  
 
   0.515
SDN08340.1
ABC-2 type transport system ATP-binding protein.
 
  
 
0.506
SDN10440.1
Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif.
    
  0.467
Your Current Organism:
Tenuibacillus multivorans
NCBI taxonomy Id: 237069
Other names: AS 1.3442, CGMCC 1.3442, NBRC 100370, T. multivorans, Tenuibacillus multivorans Ren and Zhou 2005, cf. Filobacillus sp. 1, strain 28-1
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