Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDN01734.1 | SDN02040.1 | SAMN05216498_1161 | SAMN05216498_1173 | Flagellar motor switch protein FliN/FliY. | Flagellar motor switch protein FliG. | 0.999 |
SDN01734.1 | SDN42679.1 | SAMN05216498_1161 | SAMN05216498_2285 | Flagellar motor switch protein FliN/FliY. | rsbT antagonist protein RsbS. | 0.932 |
SDN01734.1 | SDN42710.1 | SAMN05216498_1161 | SAMN05216498_2286 | Flagellar motor switch protein FliN/FliY. | Serine/threonine-protein kinase RsbT. | 0.433 |
SDN01734.1 | SDN42745.1 | SAMN05216498_1161 | SAMN05216498_2287 | Flagellar motor switch protein FliN/FliY. | sigma-B regulation protein RsbU (phosphoserine phosphatase). | 0.534 |
SDN01734.1 | SDN42883.1 | SAMN05216498_1161 | SAMN05216498_2291 | Flagellar motor switch protein FliN/FliY. | Negative regulator of sigma-B (phosphoserine phosphatase). | 0.534 |
SDN01734.1 | SDN86955.1 | SAMN05216498_1161 | SAMN05216498_0100 | Flagellar motor switch protein FliN/FliY. | Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). | 0.932 |
SDN01734.1 | rsbW | SAMN05216498_1161 | SAMN05216498_2289 | Flagellar motor switch protein FliN/FliY. | Serine/threonine-protein kinase RsbW; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B). | 0.433 |
SDN01734.1 | spoIIAB | SAMN05216498_1161 | SAMN05216498_2734 | Flagellar motor switch protein FliN/FliY. | Stage II sporulation protein AB (anti-sigma F factor); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.433 |
SDN02040.1 | SDN01734.1 | SAMN05216498_1173 | SAMN05216498_1161 | Flagellar motor switch protein FliG. | Flagellar motor switch protein FliN/FliY. | 0.999 |
SDN02040.1 | SDN42679.1 | SAMN05216498_1173 | SAMN05216498_2285 | Flagellar motor switch protein FliG. | rsbT antagonist protein RsbS. | 0.769 |
SDN02040.1 | SDN42710.1 | SAMN05216498_1173 | SAMN05216498_2286 | Flagellar motor switch protein FliG. | Serine/threonine-protein kinase RsbT. | 0.737 |
SDN02040.1 | SDN42745.1 | SAMN05216498_1173 | SAMN05216498_2287 | Flagellar motor switch protein FliG. | sigma-B regulation protein RsbU (phosphoserine phosphatase). | 0.673 |
SDN02040.1 | SDN42883.1 | SAMN05216498_1173 | SAMN05216498_2291 | Flagellar motor switch protein FliG. | Negative regulator of sigma-B (phosphoserine phosphatase). | 0.673 |
SDN02040.1 | SDN75371.1 | SAMN05216498_1173 | SAMN05216498_2999 | Flagellar motor switch protein FliG. | 2-iminoacetate synthase. | 0.539 |
SDN02040.1 | SDN86955.1 | SAMN05216498_1173 | SAMN05216498_0100 | Flagellar motor switch protein FliG. | Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). | 0.769 |
SDN02040.1 | rsbW | SAMN05216498_1173 | SAMN05216498_2289 | Flagellar motor switch protein FliG. | Serine/threonine-protein kinase RsbW; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B). | 0.737 |
SDN02040.1 | spoIIAB | SAMN05216498_1173 | SAMN05216498_2734 | Flagellar motor switch protein FliG. | Stage II sporulation protein AB (anti-sigma F factor); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.737 |
SDN42679.1 | SDN01734.1 | SAMN05216498_2285 | SAMN05216498_1161 | rsbT antagonist protein RsbS. | Flagellar motor switch protein FliN/FliY. | 0.932 |
SDN42679.1 | SDN02040.1 | SAMN05216498_2285 | SAMN05216498_1173 | rsbT antagonist protein RsbS. | Flagellar motor switch protein FliG. | 0.769 |
SDN42679.1 | SDN42710.1 | SAMN05216498_2285 | SAMN05216498_2286 | rsbT antagonist protein RsbS. | Serine/threonine-protein kinase RsbT. | 0.998 |
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