Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDM86544.1 | SDM86578.1 | SAMN05216498_0840 | SAMN05216498_0841 | Polyketide cyclase / dehydrase and lipid transport. | Hypothetical protein. | 0.608 |
SDM86578.1 | SDM86544.1 | SAMN05216498_0841 | SAMN05216498_0840 | Hypothetical protein. | Polyketide cyclase / dehydrase and lipid transport. | 0.608 |
SDM86578.1 | SDN42315.1 | SAMN05216498_0841 | SAMN05216498_2273 | Hypothetical protein. | Glutaredoxin. | 0.652 |
SDM86578.1 | SDN52539.1 | SAMN05216498_0841 | SAMN05216498_2499 | Hypothetical protein. | Glutamate synthase (NADPH/NADH) large chain. | 0.487 |
SDM86578.1 | SDN69957.1 | SAMN05216498_0841 | SAMN05216498_2889 | Hypothetical protein. | Thioredoxin reductase (NADPH). | 0.499 |
SDM86578.1 | SDN97747.1 | SAMN05216498_0841 | SAMN05216498_0350 | Hypothetical protein. | NADH dehydrogenase. | 0.512 |
SDM86578.1 | SDO03154.1 | SAMN05216498_0841 | SAMN05216498_0500 | Hypothetical protein. | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | 0.504 |
SDM86578.1 | fusA | SAMN05216498_0841 | SAMN05216498_0143 | Hypothetical protein. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.546 |
SDM86578.1 | groL | SAMN05216498_0841 | SAMN05216498_3055 | Hypothetical protein. | Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.503 |
SDM86578.1 | ndk | SAMN05216498_0841 | SAMN05216498_2681 | Hypothetical protein. | Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.475 |
SDM86578.1 | ribBA | SAMN05216498_0841 | SAMN05216498_0341 | Hypothetical protein. | 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.702 |
SDN42315.1 | SDM86578.1 | SAMN05216498_2273 | SAMN05216498_0841 | Glutaredoxin. | Hypothetical protein. | 0.652 |
SDN42315.1 | SDN52539.1 | SAMN05216498_2273 | SAMN05216498_2499 | Glutaredoxin. | Glutamate synthase (NADPH/NADH) large chain. | 0.835 |
SDN42315.1 | SDN97747.1 | SAMN05216498_2273 | SAMN05216498_0350 | Glutaredoxin. | NADH dehydrogenase. | 0.781 |
SDN42315.1 | groL | SAMN05216498_2273 | SAMN05216498_3055 | Glutaredoxin. | Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.470 |
SDN42315.1 | ndk | SAMN05216498_2273 | SAMN05216498_2681 | Glutaredoxin. | Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.573 |
SDN42315.1 | ribBA | SAMN05216498_2273 | SAMN05216498_0341 | Glutaredoxin. | 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.740 |
SDN52539.1 | SDM86578.1 | SAMN05216498_2499 | SAMN05216498_0841 | Glutamate synthase (NADPH/NADH) large chain. | Hypothetical protein. | 0.487 |
SDN52539.1 | SDN42315.1 | SAMN05216498_2499 | SAMN05216498_2273 | Glutamate synthase (NADPH/NADH) large chain. | Glutaredoxin. | 0.835 |
SDN52539.1 | SDN69957.1 | SAMN05216498_2499 | SAMN05216498_2889 | Glutamate synthase (NADPH/NADH) large chain. | Thioredoxin reductase (NADPH). | 0.789 |
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