Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDM87628.1 | SDN59749.1 | SAMN05216498_0880 | SAMN05216498_2616 | GTP-binding protein. | Small GTP-binding protein domain-containing protein. | 0.772 |
SDM87628.1 | der | SAMN05216498_0880 | SAMN05216498_2691 | GTP-binding protein. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.703 |
SDM87628.1 | fusA | SAMN05216498_0880 | SAMN05216498_0143 | GTP-binding protein. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.635 |
SDM87628.1 | guaA | SAMN05216498_0880 | SAMN05216498_1631 | GTP-binding protein. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.803 |
SDM87628.1 | rplA | SAMN05216498_0880 | SAMN05216498_0134 | GTP-binding protein. | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.743 |
SDM87628.1 | rplD | SAMN05216498_0880 | SAMN05216498_0147 | GTP-binding protein. | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.637 |
SDM87628.1 | rpoB | SAMN05216498_0880 | SAMN05216498_0138 | GTP-binding protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.632 |
SDM87628.1 | rpsI | SAMN05216498_0880 | SAMN05216498_0194 | GTP-binding protein. | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.651 |
SDM87628.1 | rpsJ | SAMN05216498_0880 | SAMN05216498_0145 | GTP-binding protein. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.626 |
SDM87628.1 | tsf | SAMN05216498_0880 | SAMN05216498_1141 | GTP-binding protein. | Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.708 |
SDN59749.1 | SDM87628.1 | SAMN05216498_2616 | SAMN05216498_0880 | Small GTP-binding protein domain-containing protein. | GTP-binding protein. | 0.772 |
SDN59749.1 | fusA | SAMN05216498_2616 | SAMN05216498_0143 | Small GTP-binding protein domain-containing protein. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.414 |
SDN59749.1 | guaA | SAMN05216498_2616 | SAMN05216498_1631 | Small GTP-binding protein domain-containing protein. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.533 |
SDN59749.1 | rplA | SAMN05216498_2616 | SAMN05216498_0134 | Small GTP-binding protein domain-containing protein. | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.415 |
SDN59749.1 | rpsI | SAMN05216498_2616 | SAMN05216498_0194 | Small GTP-binding protein domain-containing protein. | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.906 |
SDN59749.1 | rpsJ | SAMN05216498_2616 | SAMN05216498_0145 | Small GTP-binding protein domain-containing protein. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.892 |
SDN59749.1 | tsf | SAMN05216498_2616 | SAMN05216498_1141 | Small GTP-binding protein domain-containing protein. | Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.535 |
der | SDM87628.1 | SAMN05216498_2691 | SAMN05216498_0880 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | GTP-binding protein. | 0.703 |
der | guaA | SAMN05216498_2691 | SAMN05216498_1631 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.498 |
der | rplA | SAMN05216498_2691 | SAMN05216498_0134 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.577 |
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