Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDN05631.1 | SDN05661.1 | SAMN05216498_1296 | SAMN05216498_1297 | Putative membrane protein. | Putative membrane protein. | 0.904 |
SDN05631.1 | SDN05893.1 | SAMN05216498_1296 | SAMN05216498_1305 | Putative membrane protein. | Cytochrome c oxidase subunit 4. | 0.676 |
SDN05631.1 | SDN05935.1 | SAMN05216498_1296 | SAMN05216498_1306 | Putative membrane protein. | Cytochrome c oxidase subunit 3. | 0.507 |
SDN05631.1 | SDN05964.1 | SAMN05216498_1296 | SAMN05216498_1307 | Putative membrane protein. | Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | 0.447 |
SDN05631.1 | SDN05989.1 | SAMN05216498_1296 | SAMN05216498_1308 | Putative membrane protein. | Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.557 |
SDN05631.1 | SDN06966.1 | SAMN05216498_1296 | SAMN05216498_1346 | Putative membrane protein. | Protein SCO1/2. | 0.546 |
SDN05631.1 | ctaA | SAMN05216498_1296 | SAMN05216498_1310 | Putative membrane protein. | Cytochrome c oxidase assembly protein subunit 15; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 1 subfamily. | 0.709 |
SDN05631.1 | ctaB | SAMN05216498_1296 | SAMN05216498_1309 | Putative membrane protein. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily. | 0.492 |
SDN05661.1 | SDN05631.1 | SAMN05216498_1297 | SAMN05216498_1296 | Putative membrane protein. | Putative membrane protein. | 0.904 |
SDN05661.1 | SDN05893.1 | SAMN05216498_1297 | SAMN05216498_1305 | Putative membrane protein. | Cytochrome c oxidase subunit 4. | 0.940 |
SDN05661.1 | SDN05935.1 | SAMN05216498_1297 | SAMN05216498_1306 | Putative membrane protein. | Cytochrome c oxidase subunit 3. | 0.894 |
SDN05661.1 | SDN05964.1 | SAMN05216498_1297 | SAMN05216498_1307 | Putative membrane protein. | Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | 0.720 |
SDN05661.1 | SDN05989.1 | SAMN05216498_1297 | SAMN05216498_1308 | Putative membrane protein. | Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.914 |
SDN05661.1 | SDN06966.1 | SAMN05216498_1297 | SAMN05216498_1346 | Putative membrane protein. | Protein SCO1/2. | 0.672 |
SDN05661.1 | SDN39933.1 | SAMN05216498_1297 | SAMN05216498_2193 | Putative membrane protein. | Cytochrome c oxidase subunit 1; Belongs to the heme-copper respiratory oxidase family. | 0.677 |
SDN05661.1 | ctaA | SAMN05216498_1297 | SAMN05216498_1310 | Putative membrane protein. | Cytochrome c oxidase assembly protein subunit 15; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 1 subfamily. | 0.690 |
SDN05661.1 | ctaB | SAMN05216498_1297 | SAMN05216498_1309 | Putative membrane protein. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily. | 0.450 |
SDN05893.1 | SDN05631.1 | SAMN05216498_1305 | SAMN05216498_1296 | Cytochrome c oxidase subunit 4. | Putative membrane protein. | 0.676 |
SDN05893.1 | SDN05661.1 | SAMN05216498_1305 | SAMN05216498_1297 | Cytochrome c oxidase subunit 4. | Putative membrane protein. | 0.940 |
SDN05893.1 | SDN05935.1 | SAMN05216498_1305 | SAMN05216498_1306 | Cytochrome c oxidase subunit 4. | Cytochrome c oxidase subunit 3. | 0.999 |
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