Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDM90752.1 | SDN24750.1 | SAMN05216498_0980 | SAMN05216498_1845 | Ribose 5-phosphate isomerase B. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.642 |
SDM90752.1 | SDN34126.1 | SAMN05216498_0980 | SAMN05216498_1982 | Ribose 5-phosphate isomerase B. | Pseudouridine kinase. | 0.699 |
SDM90752.1 | SDN48638.1 | SAMN05216498_0980 | SAMN05216498_2372 | Ribose 5-phosphate isomerase B. | Phosphoglucomutase. | 0.603 |
SDM90752.1 | SDN60505.1 | SAMN05216498_0980 | SAMN05216498_2645 | Ribose 5-phosphate isomerase B. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.567 |
SDM90752.1 | deoB | SAMN05216498_0980 | SAMN05216498_2741 | Ribose 5-phosphate isomerase B. | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | 0.603 |
SDM90752.1 | deoC | SAMN05216498_0980 | SAMN05216498_1656 | Ribose 5-phosphate isomerase B. | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | 0.931 |
SDN19513.1 | SDN19535.1 | SAMN05216498_1657 | SAMN05216498_1658 | Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB. | 16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.898 |
SDN19513.1 | deoC | SAMN05216498_1657 | SAMN05216498_1656 | Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB. | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | 0.873 |
SDN19513.1 | prmA | SAMN05216498_1657 | SAMN05216498_1659 | Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB. | Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | 0.915 |
SDN19535.1 | SDN19513.1 | SAMN05216498_1658 | SAMN05216498_1657 | 16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB. | 0.898 |
SDN19535.1 | deoC | SAMN05216498_1658 | SAMN05216498_1656 | 16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | 0.785 |
SDN19535.1 | prmA | SAMN05216498_1658 | SAMN05216498_1659 | 16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | 0.960 |
SDN24750.1 | SDM90752.1 | SAMN05216498_1845 | SAMN05216498_0980 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Ribose 5-phosphate isomerase B. | 0.642 |
SDN24750.1 | SDN34126.1 | SAMN05216498_1845 | SAMN05216498_1982 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Pseudouridine kinase. | 0.788 |
SDN24750.1 | SDN48638.1 | SAMN05216498_1845 | SAMN05216498_2372 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Phosphoglucomutase. | 0.550 |
SDN24750.1 | SDN63504.1 | SAMN05216498_1845 | SAMN05216498_2739 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Pyrimidine-nucleoside phosphorylase. | 0.528 |
SDN24750.1 | deoB | SAMN05216498_1845 | SAMN05216498_2741 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | 0.630 |
SDN24750.1 | deoC | SAMN05216498_1845 | SAMN05216498_1656 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | 0.738 |
SDN34126.1 | SDM90752.1 | SAMN05216498_1982 | SAMN05216498_0980 | Pseudouridine kinase. | Ribose 5-phosphate isomerase B. | 0.699 |
SDN34126.1 | SDN24750.1 | SAMN05216498_1982 | SAMN05216498_1845 | Pseudouridine kinase. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.788 |
page 1 of 3