Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDN36468.1 | SDN36503.1 | SAMN05216498_2058 | SAMN05216498_2059 | Cxxc_20_cxxc protein. | Phosphinothricin acetyltransferase. | 0.543 |
SDN36468.1 | SDN52464.1 | SAMN05216498_2058 | SAMN05216498_2497 | Cxxc_20_cxxc protein. | Putative zinc-finger. | 0.450 |
SDN36468.1 | SDN61607.1 | SAMN05216498_2058 | SAMN05216498_2680 | Cxxc_20_cxxc protein. | Chemotaxis protein methyltransferase CheR. | 0.436 |
SDN36468.1 | SDN85806.1 | SAMN05216498_2058 | SAMN05216498_0063 | Cxxc_20_cxxc protein. | Protein of unknown function. | 0.461 |
SDN36468.1 | SDN93159.1 | SAMN05216498_2058 | SAMN05216498_0222 | Cxxc_20_cxxc protein. | Putative zinc-finger. | 0.465 |
SDN36468.1 | rpoA | SAMN05216498_2058 | SAMN05216498_0174 | Cxxc_20_cxxc protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.419 |
SDN36468.1 | rpoB | SAMN05216498_2058 | SAMN05216498_0138 | Cxxc_20_cxxc protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.468 |
SDN36468.1 | rpoC | SAMN05216498_2058 | SAMN05216498_0139 | Cxxc_20_cxxc protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.489 |
SDN36468.1 | rpoZ | SAMN05216498_2058 | SAMN05216498_1223 | Cxxc_20_cxxc protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.418 |
SDN36468.1 | topA | SAMN05216498_2058 | SAMN05216498_1182 | Cxxc_20_cxxc protein. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.465 |
SDN36503.1 | SDN36468.1 | SAMN05216498_2059 | SAMN05216498_2058 | Phosphinothricin acetyltransferase. | Cxxc_20_cxxc protein. | 0.543 |
SDN52464.1 | SDN36468.1 | SAMN05216498_2497 | SAMN05216498_2058 | Putative zinc-finger. | Cxxc_20_cxxc protein. | 0.450 |
SDN61607.1 | SDN36468.1 | SAMN05216498_2680 | SAMN05216498_2058 | Chemotaxis protein methyltransferase CheR. | Cxxc_20_cxxc protein. | 0.436 |
SDN85806.1 | SDN36468.1 | SAMN05216498_0063 | SAMN05216498_2058 | Protein of unknown function. | Cxxc_20_cxxc protein. | 0.461 |
SDN93159.1 | SDN36468.1 | SAMN05216498_0222 | SAMN05216498_2058 | Putative zinc-finger. | Cxxc_20_cxxc protein. | 0.465 |
rpoA | SDN36468.1 | SAMN05216498_0174 | SAMN05216498_2058 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Cxxc_20_cxxc protein. | 0.419 |
rpoA | rpoB | SAMN05216498_0174 | SAMN05216498_0138 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
rpoA | rpoC | SAMN05216498_0174 | SAMN05216498_0139 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
rpoA | rpoZ | SAMN05216498_0174 | SAMN05216498_1223 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.997 |
rpoA | topA | SAMN05216498_0174 | SAMN05216498_1182 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.910 |
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