STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO14273.1DNA-binding transcriptional regulator, ArsR family. (109 aa)    
Predicted Functional Partners:
SDO14299.1
Methyltransferase domain-containing protein.
   
 0.889
nifJ
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.708
arsB
Arsenite transporter, ACR3 family.
 
  
 0.595
SDO14265.1
Hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
  
    0.557
SDO14352.1
Arsenate reductase.
  
  
 0.520
SDO14406.1
Cu2+-exporting ATPase.
  
  
 0.457
SDO14239.1
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.
     
 0.453
Your Current Organism:
Cloacibacterium normanense
NCBI taxonomy Id: 237258
Other names: ATCC BAA-825, C. normanense, CCUG 46293, CIP 108613, Cloacibacterium normanense Allen et al. 2006, Cloacibacterium sp. IMET F, DSM 15886, cf. Bergeyella sp. CCUG 46293, strain NRS1
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