STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO14870.1Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. (330 aa)    
Predicted Functional Partners:
engA
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.868
cmk
Cytidylate kinase.
 
  
 0.828
SDO14887.1
Protein of unknown function.
  
    0.600
YtxJ
Bacillithiol system protein YtxJ.
       0.600
SDO14929.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
       0.572
SDO14841.1
Arabinogalactan endo-1,4-beta-galactosidase.
       0.534
SDO14854.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
       0.534
SDO14948.1
Hypothetical protein.
       0.510
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
 
   
 0.506
SDO27936.1
Exonuclease III.
  
    0.498
Your Current Organism:
Cloacibacterium normanense
NCBI taxonomy Id: 237258
Other names: ATCC BAA-825, C. normanense, CCUG 46293, CIP 108613, Cloacibacterium normanense Allen et al. 2006, Cloacibacterium sp. IMET F, DSM 15886, cf. Bergeyella sp. CCUG 46293, strain NRS1
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