STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO18428.1ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain. (551 aa)    
Predicted Functional Partners:
SDO18401.1
Multidrug resistance efflux pump.
 
 0.980
SDO18380.1
Outer membrane protein TolC.
 
  
 0.966
SDO18360.1
Hypothetical protein.
       0.773
SDO24316.1
ATP-binding cassette, subfamily B.
 
  
0.716
SDO18345.1
Hypothetical protein.
       0.615
SDO18115.1
HlyD family secretion protein.
  
 
 0.577
SDO42777.1
HlyD family secretion protein.
  
 
 0.577
SDO18449.1
Protein of unknown function.
       0.542
SDO63920.1
ABC-type multidrug transport system, ATPase and permease component.
 
 
  
0.525
SDO49287.1
ATP-binding cassette, subfamily B, MsbA.
 
 
  
0.520
Your Current Organism:
Cloacibacterium normanense
NCBI taxonomy Id: 237258
Other names: ATCC BAA-825, C. normanense, CCUG 46293, CIP 108613, Cloacibacterium normanense Allen et al. 2006, Cloacibacterium sp. IMET F, DSM 15886, cf. Bergeyella sp. CCUG 46293, strain NRS1
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