STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO18449.1Protein of unknown function. (225 aa)    
Predicted Functional Partners:
SDO18360.1
Hypothetical protein.
       0.556
SDO27601.1
Outer membrane protein.
  
     0.549
SDO18380.1
Outer membrane protein TolC.
       0.542
SDO18401.1
Multidrug resistance efflux pump.
  
    0.542
SDO18428.1
ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain.
       0.542
SDO78462.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.472
SDO18345.1
Hypothetical protein.
       0.441
SDO83110.1
Hypothetical protein.
  
     0.431
SDO13142.1
Outer membrane protein beta-barrel family protein.
  
     0.412
Your Current Organism:
Cloacibacterium normanense
NCBI taxonomy Id: 237258
Other names: ATCC BAA-825, C. normanense, CCUG 46293, CIP 108613, Cloacibacterium normanense Allen et al. 2006, Cloacibacterium sp. IMET F, DSM 15886, cf. Bergeyella sp. CCUG 46293, strain NRS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.