STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO23651.1NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. (293 aa)    
Predicted Functional Partners:
paaN
oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.
  
 0.643
SDO15127.1
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family.
   
 
 0.631
fabD
[acyl-carrier-protein] S-malonyltransferase.
 
 
 0.626
SDO23747.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.616
SDO89922.1
WD40-like Beta Propeller Repeat.
  
 0.609
SDO72077.1
Predicted O-methyltransferase YrrM.
  
 
 0.600
fabF
3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
 0.571
fabZ
3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
  
 
 0.569
SDO23662.1
Gliding motility-associated C-terminal domain-containing protein.
       0.547
SDO23629.1
Predicted Zn-dependent peptidase; Belongs to the peptidase M16 family.
   
   0.544
Your Current Organism:
Cloacibacterium normanense
NCBI taxonomy Id: 237258
Other names: ATCC BAA-825, C. normanense, CCUG 46293, CIP 108613, Cloacibacterium normanense Allen et al. 2006, Cloacibacterium sp. IMET F, DSM 15886, cf. Bergeyella sp. CCUG 46293, strain NRS1
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