STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO27342.1TonB-linked outer membrane protein, SusC/RagA family. (924 aa)    
Predicted Functional Partners:
SDO27326.1
Starch-binding associating with outer membrane.
     0.935
SDO12785.1
Starch-binding associating with outer membrane.
 
   
 0.729
SDO59525.1
Hypothetical protein.
  
     0.719
SDO22369.1
TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region.
  
     0.711
SDO27307.1
Glucosylceramidase; Belongs to the glycosyl hydrolase 30 family.
 
     0.683
SDO59597.1
Starch-binding associating with outer membrane.
     0.673
SDO71343.1
Starch-binding associating with outer membrane.
     0.651
SDO50727.1
SusD family protein.
 
     0.588
SDO92301.1
Hypothetical protein.
  
     0.580
SDO76340.1
Starch-binding associating with outer membrane.
 
     0.503
Your Current Organism:
Cloacibacterium normanense
NCBI taxonomy Id: 237258
Other names: ATCC BAA-825, C. normanense, CCUG 46293, CIP 108613, Cloacibacterium normanense Allen et al. 2006, Cloacibacterium sp. IMET F, DSM 15886, cf. Bergeyella sp. CCUG 46293, strain NRS1
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