STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfiOBeta-barrel assembly machine subunit BamD. (324 aa)    
Predicted Functional Partners:
SDO32806.1
Beta-barrel assembly machine subunit BamA.
 
 
 0.917
SDO36408.1
RNA polymerase Rpb6; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
 
 
 0.869
SDO78684.1
Hypothetical protein.
  
 
 0.822
SDO89948.1
Surface antigen.
 
 
 0.787
SDO46886.1
Protein of unknown function.
  
     0.722
lepB
Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.697
SDO33741.1
Ig-like domain-containing protein.
  
     0.688
SDO68837.1
Long-chain fatty acid transport protein.
 
   
 0.686
SDO83110.1
Hypothetical protein.
 
 
 0.654
SDO59180.1
Lipopolysaccharide export system permease protein.
  
   
 0.651
Your Current Organism:
Cloacibacterium normanense
NCBI taxonomy Id: 237258
Other names: ATCC BAA-825, C. normanense, CCUG 46293, CIP 108613, Cloacibacterium normanense Allen et al. 2006, Cloacibacterium sp. IMET F, DSM 15886, cf. Bergeyella sp. CCUG 46293, strain NRS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.