Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDO32578.1 | SDO32730.1 | SAMN04489756_1053 | SAMN04489756_1056 | Hypothetical protein. | acyl-CoA thioester hydrolase. | 0.773 |
SDO32578.1 | rfbC | SAMN04489756_1053 | SAMN04489756_1055 | Hypothetical protein. | dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. | 0.773 |
SDO32578.1 | rfbD | SAMN04489756_1053 | SAMN04489756_1054 | Hypothetical protein. | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | 0.773 |
SDO32730.1 | SDO32578.1 | SAMN04489756_1056 | SAMN04489756_1053 | acyl-CoA thioester hydrolase. | Hypothetical protein. | 0.773 |
SDO32730.1 | rfbC | SAMN04489756_1056 | SAMN04489756_1055 | acyl-CoA thioester hydrolase. | dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. | 0.774 |
SDO32730.1 | rfbD | SAMN04489756_1056 | SAMN04489756_1054 | acyl-CoA thioester hydrolase. | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | 0.776 |
SDO49500.1 | SDO50540.1 | SAMN04489756_10845 | SAMN04489756_10890 | Nucleotidyl transferase. | UDPglucose 6-dehydrogenase. | 0.453 |
SDO49500.1 | SDO79641.1 | SAMN04489756_10845 | SAMN04489756_1196 | Nucleotidyl transferase. | dTDP-L-rhamnose 4-epimerase. | 0.439 |
SDO49500.1 | rfbA | SAMN04489756_10845 | SAMN04489756_10887 | Nucleotidyl transferase. | Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. | 0.656 |
SDO49500.1 | rfbB | SAMN04489756_10845 | SAMN04489756_10889 | Nucleotidyl transferase. | dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. | 0.613 |
SDO49500.1 | rfbC | SAMN04489756_10845 | SAMN04489756_1055 | Nucleotidyl transferase. | dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. | 0.663 |
SDO49500.1 | rfbD | SAMN04489756_10845 | SAMN04489756_1054 | Nucleotidyl transferase. | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | 0.478 |
SDO50540.1 | SDO49500.1 | SAMN04489756_10890 | SAMN04489756_10845 | UDPglucose 6-dehydrogenase. | Nucleotidyl transferase. | 0.453 |
SDO50540.1 | SDO79641.1 | SAMN04489756_10890 | SAMN04489756_1196 | UDPglucose 6-dehydrogenase. | dTDP-L-rhamnose 4-epimerase. | 0.505 |
SDO50540.1 | glf | SAMN04489756_10890 | SAMN04489756_10884 | UDPglucose 6-dehydrogenase. | UDP-galactopyranose mutase. | 0.902 |
SDO50540.1 | rfbA | SAMN04489756_10890 | SAMN04489756_10887 | UDPglucose 6-dehydrogenase. | Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. | 0.824 |
SDO50540.1 | rfbB | SAMN04489756_10890 | SAMN04489756_10889 | UDPglucose 6-dehydrogenase. | dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. | 0.915 |
SDO50540.1 | rfbC | SAMN04489756_10890 | SAMN04489756_1055 | UDPglucose 6-dehydrogenase. | dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. | 0.717 |
SDO77082.1 | rfbB | SAMN04489756_11750 | SAMN04489756_10889 | Glycosyl transferase family 2. | dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. | 0.454 |
SDO77082.1 | rfbC | SAMN04489756_11750 | SAMN04489756_1055 | Glycosyl transferase family 2. | dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. | 0.686 |
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