STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO42092.1Por secretion system C-terminal sorting domain-containing protein. (597 aa)    
Predicted Functional Partners:
SDO42072.1
Lipoprotein-releasing system permease protein.
  
    0.611
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
       0.605
PorU
Peptidase family C25.
  
     0.599
PorQ
Hypothetical protein.
  
     0.596
SDO22299.1
Hypothetical protein.
  
     0.593
SDO93231.1
Hypothetical protein.
  
     0.589
SDO42110.1
Shikimate dehydrogenase.
       0.588
SDO73647.1
Outer membrane translocation and assembly module TamA.
  
   
 0.567
SDO39710.1
Hypothetical protein.
  
     0.500
SDO81494.1
Por secretion system C-terminal sorting domain-containing protein; Belongs to the glycosyl hydrolase 13 family.
  
   
 0.486
Your Current Organism:
Cloacibacterium normanense
NCBI taxonomy Id: 237258
Other names: ATCC BAA-825, C. normanense, CCUG 46293, CIP 108613, Cloacibacterium normanense Allen et al. 2006, Cloacibacterium sp. IMET F, DSM 15886, cf. Bergeyella sp. CCUG 46293, strain NRS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.