STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO45826.1Kef-type K+ transport system, membrane component KefB. (410 aa)    
Predicted Functional Partners:
SDO45807.1
Phosphoribosyl-ATP pyrophosphohydrolase.
       0.773
SDO45792.1
Thiol-disulfide isomerase or thioredoxin.
   
   0.729
SDO45772.1
Protein of unknown function.
       0.718
SDO53023.1
Ca2+-transporting ATPase.
 
 0.549
SDO45857.1
Por secretion system C-terminal sorting domain-containing protein.
       0.526
SDO45746.1
Hypothetical protein.
       0.488
SDO19889.1
Na+/proline symporter.
     
 0.443
SDO25212.1
Sodium/proton antiporter, CPA1 family.
   
 
 0.423
SDO89922.1
WD40-like Beta Propeller Repeat.
     
 0.422
msrA-2
Peptide methionine sulfoxide reductase msrA/msrB; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.419
Your Current Organism:
Cloacibacterium normanense
NCBI taxonomy Id: 237258
Other names: ATCC BAA-825, C. normanense, CCUG 46293, CIP 108613, Cloacibacterium normanense Allen et al. 2006, Cloacibacterium sp. IMET F, DSM 15886, cf. Bergeyella sp. CCUG 46293, strain NRS1
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