STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO50679.1SusD family protein. (492 aa)    
Predicted Functional Partners:
SDO50661.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.950
SDO50636.1
TonB-dependent Receptor Plug Domain.
 
     0.880
SDO50701.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.696
SDO76362.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.664
SDO59571.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
 
 0.632
SDO76340.1
Starch-binding associating with outer membrane.
  
 
 0.568
SDO22717.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.550
SDO81568.1
Iron complex outermembrane recepter protein.
  
 
   0.550
SDO26763.1
Hypothetical protein.
  
    0.549
SDO50727.1
SusD family protein.
 
    
0.477
Your Current Organism:
Cloacibacterium normanense
NCBI taxonomy Id: 237258
Other names: ATCC BAA-825, C. normanense, CCUG 46293, CIP 108613, Cloacibacterium normanense Allen et al. 2006, Cloacibacterium sp. IMET F, DSM 15886, cf. Bergeyella sp. CCUG 46293, strain NRS1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.