STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO53943.1Phage shock protein PspC (stress-responsive transcriptional regulator). (92 aa)    
Predicted Functional Partners:
SDO53920.1
PadR family transcriptional regulator, regulatory protein PadR.
 
     0.718
SDO67551.1
Putative membrane protein.
  
    0.640
SDO53890.1
Phage shock protein PspC (stress-responsive transcriptional regulator).
 
    
0.518
SDO53960.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
  
    0.450
SDO81644.1
Tetratricopeptide repeat-containing protein.
  
  
 0.427
SDO14188.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
   
   0.425
SDO24239.1
Protein of unknown function.
   
   0.425
SDO48941.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
   
   0.425
SDO65758.1
Histidine kinase.
  
  
 0.407
SDO78364.1
Two-component system, NarL family, sensor histidine kinase DesK.
  
  
 0.407
Your Current Organism:
Cloacibacterium normanense
NCBI taxonomy Id: 237258
Other names: ATCC BAA-825, C. normanense, CCUG 46293, CIP 108613, Cloacibacterium normanense Allen et al. 2006, Cloacibacterium sp. IMET F, DSM 15886, cf. Bergeyella sp. CCUG 46293, strain NRS1
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