STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO54096.1Sulfide:quinone oxidoreductase. (415 aa)    
Predicted Functional Partners:
SDO24146.1
Cystathionine gamma-synthase.
   
  0.906
tusE
tRNA 2-thiouridine synthesizing protein E.
 
     0.900
SDO73934.1
O-acetylhomoserine sulfhydrylase.
     
  0.900
cysK
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
     
 0.900
SDO54053.1
Peroxiredoxin family protein.
 
     0.865
SDO15614.1
Long-chain fatty acid transport protein.
 
     0.615
SDO54124.1
Putative hydrolases of HD superfamily.
       0.513
SDO53960.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
  
  
 0.444
nifJ
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
  
 0.442
mdh
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
   
 
 0.423
Your Current Organism:
Cloacibacterium normanense
NCBI taxonomy Id: 237258
Other names: ATCC BAA-825, C. normanense, CCUG 46293, CIP 108613, Cloacibacterium normanense Allen et al. 2006, Cloacibacterium sp. IMET F, DSM 15886, cf. Bergeyella sp. CCUG 46293, strain NRS1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.