STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO56584.1dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family. (367 aa)    
Predicted Functional Partners:
SDO56609.1
Transferase hexapeptide (six repeat-containing protein).
  
 0.988
SDO56569.1
3-beta hydroxysteroid dehydrogenase/isomerase family protein; NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
 0.970
SDO56630.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
  
 0.957
SDO56244.1
UDP-glucose 4-epimerase.
  
 0.848
SDO56469.1
UDP-N-acetyl-D-galactosamine dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.800
SDO56487.1
UDP-N-acetylglucosamine 4-epimerase.
 
  
 0.771
SDO56523.1
Capsular exopolysaccharide family.
  
  
 0.719
SDO60381.1
Predicted dehydrogenase.
  
 0.696
SDO56545.1
Polysaccharide export outer membrane protein.
     
 0.691
SDO56154.1
UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase.
  
  
 0.690
Your Current Organism:
Cloacibacterium normanense
NCBI taxonomy Id: 237258
Other names: ATCC BAA-825, C. normanense, CCUG 46293, CIP 108613, Cloacibacterium normanense Allen et al. 2006, Cloacibacterium sp. IMET F, DSM 15886, cf. Bergeyella sp. CCUG 46293, strain NRS1
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