STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO60418.1Nitroreductase. (242 aa)    
Predicted Functional Partners:
pcm
protein-L-isoaspartate(D-aspartate) O-methyltransferase.
  
  
 0.781
SDO22770.1
O-succinylbenzoic acid--CoA ligase.
   
 
 0.504
SDO18140.1
ABC-2 type transport system permease protein.
  
  
 0.484
SDO42867.1
ABC-2 type transport system permease protein.
  
  
 0.484
SDO42892.1
ABC-2 type transport system permease protein.
  
  
 0.484
nifJ
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
  
 0.456
SDO18197.1
Catechol 2,3-dioxygenase.
  
    0.451
SDO54625.1
Glyoxylase I family protein.
  
    0.451
SDO60381.1
Predicted dehydrogenase.
       0.439
SDO18751.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.433
Your Current Organism:
Cloacibacterium normanense
NCBI taxonomy Id: 237258
Other names: ATCC BAA-825, C. normanense, CCUG 46293, CIP 108613, Cloacibacterium normanense Allen et al. 2006, Cloacibacterium sp. IMET F, DSM 15886, cf. Bergeyella sp. CCUG 46293, strain NRS1
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