STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO66068.1Hypothetical protein. (178 aa)    
Predicted Functional Partners:
SDO66041.1
PD-(D/E)XK nuclease superfamily protein.
       0.773
SDO66089.1
Hypothetical protein.
       0.773
gidB
16S rRNA m(7)G-527 methyltransferase; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
       0.757
SDO66131.1
Aspartate aminotransferase.
       0.536
SDO18181.1
Protein of unknown function.
  
     0.507
SDO45639.1
Hypothetical protein.
  
     0.499
SDO86767.1
Protein of unknown function (DU1801).
  
     0.465
SDO12704.1
Methyltransferase domain-containing protein.
  
     0.414
SDO56487.1
UDP-N-acetylglucosamine 4-epimerase.
  
     0.402
SDO40445.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
  
     0.400
Your Current Organism:
Cloacibacterium normanense
NCBI taxonomy Id: 237258
Other names: ATCC BAA-825, C. normanense, CCUG 46293, CIP 108613, Cloacibacterium normanense Allen et al. 2006, Cloacibacterium sp. IMET F, DSM 15886, cf. Bergeyella sp. CCUG 46293, strain NRS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.