STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO69681.1Hypothetical protein. (194 aa)    
Predicted Functional Partners:
SDO69708.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
       0.816
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.808
lepB
Signal peptidase I; Belongs to the peptidase S26 family.
 
     0.773
SDO75176.1
Hypothetical protein.
  
    0.764
SDO82085.1
OstA-like protein.
 
    0.761
SDO69730.1
Chromosome partitioning protein.
       0.727
SDO15203.1
Hypothetical protein.
  
     0.681
SDO33741.1
Ig-like domain-containing protein.
  
     0.674
SDO46886.1
Protein of unknown function.
  
     0.663
SDO72594.1
Uncharacterized metal-binding protein YceD, DUF177 family.
  
     0.659
Your Current Organism:
Cloacibacterium normanense
NCBI taxonomy Id: 237258
Other names: ATCC BAA-825, C. normanense, CCUG 46293, CIP 108613, Cloacibacterium normanense Allen et al. 2006, Cloacibacterium sp. IMET F, DSM 15886, cf. Bergeyella sp. CCUG 46293, strain NRS1
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