STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO69916.1Inorganic phosphate transporter, PiT family. (380 aa)    
Predicted Functional Partners:
SDO69887.1
Hypothetical protein.
 
  
 0.977
nifJ
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.559
SDO69944.1
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
     
 0.552
SDO18751.1
Glutamate synthase (NADPH/NADH) large chain.
  
  
 0.547
SDO69960.1
GSCFA family protein.
       0.523
paiA
Ribosomal protein S18 acetylase RimI.
  
  
 0.479
SDO69875.1
Protein of unknown function.
       0.466
SDO71796.1
Phosphate transport system substrate-binding protein.
 
   
 0.458
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
   
    0.454
hisB
Imidazoleglycerol-phosphate dehydratase; In the C-terminal section; belongs to the imidazoleglycerol-phosphate dehydratase family.
     
 0.451
Your Current Organism:
Cloacibacterium normanense
NCBI taxonomy Id: 237258
Other names: ATCC BAA-825, C. normanense, CCUG 46293, CIP 108613, Cloacibacterium normanense Allen et al. 2006, Cloacibacterium sp. IMET F, DSM 15886, cf. Bergeyella sp. CCUG 46293, strain NRS1
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