STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO75176.1Hypothetical protein. (863 aa)    
Predicted Functional Partners:
SDO89948.1
Surface antigen.
  
  
 0.796
SDO53329.1
Membrane protein YfhO.
  
     0.764
SDO69681.1
Hypothetical protein.
  
    0.764
SDO46886.1
Protein of unknown function.
  
     0.761
SDO33741.1
Ig-like domain-containing protein.
  
     0.759
SDO35261.1
Peptidyl-prolyl cis-trans isomerase D.
 
  
 0.757
SDO32806.1
Beta-barrel assembly machine subunit BamA.
  
  
 0.743
SDO68837.1
Long-chain fatty acid transport protein.
  
   
 0.740
SDO75193.1
N-acetylmuramoyl-L-alanine amidase.
 
     0.722
SDO80227.1
Hypothetical protein.
 
   
 0.719
Your Current Organism:
Cloacibacterium normanense
NCBI taxonomy Id: 237258
Other names: ATCC BAA-825, C. normanense, CCUG 46293, CIP 108613, Cloacibacterium normanense Allen et al. 2006, Cloacibacterium sp. IMET F, DSM 15886, cf. Bergeyella sp. CCUG 46293, strain NRS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.