Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDO18140.1 | SDO18197.1 | SAMN04489756_10250 | SAMN04489756_10253 | ABC-2 type transport system permease protein. | Catechol 2,3-dioxygenase. | 0.517 |
SDO18140.1 | SDO85261.1 | SAMN04489756_10250 | SAMN04489756_12237 | ABC-2 type transport system permease protein. | Nitroreductase. | 0.484 |
SDO18197.1 | SDO18140.1 | SAMN04489756_10253 | SAMN04489756_10250 | Catechol 2,3-dioxygenase. | ABC-2 type transport system permease protein. | 0.517 |
SDO18197.1 | SDO85261.1 | SAMN04489756_10253 | SAMN04489756_12237 | Catechol 2,3-dioxygenase. | Nitroreductase. | 0.451 |
SDO18751.1 | SDO85261.1 | SAMN04489756_10280 | SAMN04489756_12237 | Glutamate synthase (NADPH/NADH) large chain. | Nitroreductase. | 0.433 |
SDO18751.1 | nifJ | SAMN04489756_10280 | SAMN04489756_10963 | Glutamate synthase (NADPH/NADH) large chain. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.834 |
SDO22770.1 | SDO85261.1 | SAMN04489756_10335 | SAMN04489756_12237 | O-succinylbenzoic acid--CoA ligase. | Nitroreductase. | 0.504 |
SDO42867.1 | SDO42892.1 | SAMN04489756_106137 | SAMN04489756_106138 | ABC-2 type transport system permease protein. | ABC-2 type transport system permease protein. | 0.735 |
SDO42867.1 | SDO85261.1 | SAMN04489756_106137 | SAMN04489756_12237 | ABC-2 type transport system permease protein. | Nitroreductase. | 0.484 |
SDO42892.1 | SDO42867.1 | SAMN04489756_106138 | SAMN04489756_106137 | ABC-2 type transport system permease protein. | ABC-2 type transport system permease protein. | 0.735 |
SDO42892.1 | SDO85261.1 | SAMN04489756_106138 | SAMN04489756_12237 | ABC-2 type transport system permease protein. | Nitroreductase. | 0.484 |
SDO54625.1 | SDO85261.1 | SAMN04489756_10990 | SAMN04489756_12237 | Glyoxylase I family protein. | Nitroreductase. | 0.451 |
SDO85214.1 | SDO85243.1 | SAMN04489756_12235 | SAMN04489756_12236 | Transcriptional regulator/antitoxin, MazE. | mRNA interferase MazF; Toxic component of a type II toxin-antitoxin (TA) system. | 0.989 |
SDO85214.1 | SDO85261.1 | SAMN04489756_12235 | SAMN04489756_12237 | Transcriptional regulator/antitoxin, MazE. | Nitroreductase. | 0.518 |
SDO85243.1 | SDO85214.1 | SAMN04489756_12236 | SAMN04489756_12235 | mRNA interferase MazF; Toxic component of a type II toxin-antitoxin (TA) system. | Transcriptional regulator/antitoxin, MazE. | 0.989 |
SDO85243.1 | SDO85261.1 | SAMN04489756_12236 | SAMN04489756_12237 | mRNA interferase MazF; Toxic component of a type II toxin-antitoxin (TA) system. | Nitroreductase. | 0.532 |
SDO85261.1 | SDO18140.1 | SAMN04489756_12237 | SAMN04489756_10250 | Nitroreductase. | ABC-2 type transport system permease protein. | 0.484 |
SDO85261.1 | SDO18197.1 | SAMN04489756_12237 | SAMN04489756_10253 | Nitroreductase. | Catechol 2,3-dioxygenase. | 0.451 |
SDO85261.1 | SDO18751.1 | SAMN04489756_12237 | SAMN04489756_10280 | Nitroreductase. | Glutamate synthase (NADPH/NADH) large chain. | 0.433 |
SDO85261.1 | SDO22770.1 | SAMN04489756_12237 | SAMN04489756_10335 | Nitroreductase. | O-succinylbenzoic acid--CoA ligase. | 0.504 |
page 1 of 2