Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDO86657.1 | SDO87428.1 | SAMN04489756_12338 | SAMN04489756_1249 | ATP-dependent DNA helicase RecQ. | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | 0.551 |
| SDO86657.1 | dnaN | SAMN04489756_12338 | SAMN04489756_11148 | ATP-dependent DNA helicase RecQ. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.556 |
| SDO86657.1 | mutS | SAMN04489756_12338 | SAMN04489756_1044 | ATP-dependent DNA helicase RecQ. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.524 |
| SDO86657.1 | polA | SAMN04489756_12338 | SAMN04489756_11470 | ATP-dependent DNA helicase RecQ. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.860 |
| SDO87428.1 | SDO86657.1 | SAMN04489756_1249 | SAMN04489756_12338 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | ATP-dependent DNA helicase RecQ. | 0.551 |
| SDO87428.1 | SDO87434.1 | SAMN04489756_1249 | SAMN04489756_12410 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | Z1 domain-containing protein. | 0.765 |
| SDO87428.1 | SDO87461.1 | SAMN04489756_1249 | SAMN04489756_12411 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | Putative PD-(D/E)XK family member. | 0.758 |
| SDO87428.1 | SDO87475.1 | SAMN04489756_1249 | SAMN04489756_12412 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | Hypothetical protein. | 0.757 |
| SDO87428.1 | dnaN | SAMN04489756_1249 | SAMN04489756_11148 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.689 |
| SDO87428.1 | hhaIM | SAMN04489756_1249 | SAMN04489756_1248 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | DNA (cytosine-5)-methyltransferase 1. | 0.803 |
| SDO87428.1 | mutS | SAMN04489756_1249 | SAMN04489756_1044 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.880 |
| SDO87428.1 | nifJ | SAMN04489756_1249 | SAMN04489756_10963 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.592 |
| SDO87428.1 | polA | SAMN04489756_1249 | SAMN04489756_11470 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.824 |
| SDO87428.1 | recQ | SAMN04489756_1249 | SAMN04489756_101161 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | ATP-dependent DNA helicase RecQ. | 0.551 |
| SDO87434.1 | SDO87428.1 | SAMN04489756_12410 | SAMN04489756_1249 | Z1 domain-containing protein. | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | 0.765 |
| SDO87434.1 | SDO87461.1 | SAMN04489756_12410 | SAMN04489756_12411 | Z1 domain-containing protein. | Putative PD-(D/E)XK family member. | 0.788 |
| SDO87434.1 | SDO87475.1 | SAMN04489756_12410 | SAMN04489756_12412 | Z1 domain-containing protein. | Hypothetical protein. | 0.787 |
| SDO87434.1 | hhaIM | SAMN04489756_12410 | SAMN04489756_1248 | Z1 domain-containing protein. | DNA (cytosine-5)-methyltransferase 1. | 0.929 |
| SDO87461.1 | SDO87428.1 | SAMN04489756_12411 | SAMN04489756_1249 | Putative PD-(D/E)XK family member. | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | 0.758 |
| SDO87461.1 | SDO87434.1 | SAMN04489756_12411 | SAMN04489756_12410 | Putative PD-(D/E)XK family member. | Z1 domain-containing protein. | 0.788 |
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