STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIL59447.1SdiA-regulated domain-containing protein. (310 aa)    
Predicted Functional Partners:
AIL60186.1
Lipopolysaccharide kinase InaA.
 
   
 0.778
AIL59617.1
Lipopolysaccharide kinase (Kdo/WaaP) family.
 
     0.769
AIL59616.1
Heptose kinase WapQ.
 
     0.766
AIL59614.1
Lipopolysaccharide core biosynthesis protein WaaP; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
  
     0.762
AIL60185.1
Type 11 methyltransferase.
  
   
 0.737
AIL60655.1
Sulfatase.
  
     0.735
AIL63974.1
Deacetylase.
  
     0.729
AIL59613.1
Lipopolysaccharide core biosynthesis protein WaaG.
  
     0.725
AIL60549.1
Hypothetical protein.
  
     0.694
AIL59490.1
OprD family outer membrane porin.
  
     0.683
Your Current Organism:
Pseudomonas alkylphenolica
NCBI taxonomy Id: 237609
Other names: JCM 16553, KCTC 22206, P. alkylphenolica, Pseudomonas alkylphenolia, Pseudomonas alkylphenolica Mulet et al. 2015, Pseudomonas sp. KL28, strain KL28
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