STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIL61969.1RpiR family transcriptional regulator. (289 aa)    
Predicted Functional Partners:
AIL61970.1
Amino acid ABC transporter substrate-binding protein.
 
   
 0.723
AIL64011.1
Hypothetical protein.
  
     0.609
AIL61972.1
Amino acid ABC transporter permease.
 
    0.588
AIL61973.1
D-amino acid dehydrogenase small subunit.
 
   
 0.571
AIL61968.1
malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
     
 0.548
AIL61572.1
Cellulase, glycosyl hydrolase family 5.
  
     0.546
AIL59658.1
Lipopolysaccharide core biosynthesis domain-containing protein.
  
     0.535
AIL62397.1
Type I pilus protein CsuA/B.
  
     0.528
AIL61971.1
Amino acid ABC transporter, permease protein.
 
     0.526
AIL63675.1
Hypothetical protein.
  
     0.517
Your Current Organism:
Pseudomonas alkylphenolica
NCBI taxonomy Id: 237609
Other names: JCM 16553, KCTC 22206, P. alkylphenolica, Pseudomonas alkylphenolia, Pseudomonas alkylphenolica Mulet et al. 2015, Pseudomonas sp. KL28, strain KL28
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