STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIL62200.1Cobyrinic acid ac-diamide synthase. (287 aa)    
Predicted Functional Partners:
AIL62202.1
Integrating conjugative element ParB.
 
 
 0.978
AIL62203.1
Coproporphyrinogen III oxidase.
 
     0.954
AIL62204.1
Hypothetical protein.
 
     0.954
AIL62199.1
Phage transcriptional regulator, AlpA.
 
     0.868
AIL62211.1
DNA topoisomerase III.
 
   
 0.814
AIL62205.1
Integrating conjugative element protein, PFL_4669 family.
 
     0.808
AIL62201.1
Hypothetical protein.
       0.807
AIL62207.1
Single-stranded DNA-binding protein.
 
     0.803
AIL62235.1
Conjugative transfer ATPase.
 
   
 0.793
AIL62223.1
Conjugative coupling factor TraD, TOL family.
 
   
 0.792
Your Current Organism:
Pseudomonas alkylphenolica
NCBI taxonomy Id: 237609
Other names: JCM 16553, KCTC 22206, P. alkylphenolica, Pseudomonas alkylphenolia, Pseudomonas alkylphenolica Mulet et al. 2015, Pseudomonas sp. KL28, strain KL28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.