STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIL62646.1anti-FecI sigma factor FecR. (292 aa)    
Predicted Functional Partners:
AIL62647.1
ECF subfamily RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.981
AIL59623.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.820
AIL61230.1
Sigma-70 factor, ECF subfamily.
 
 
 0.820
AIL59929.1
ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.819
AIL60072.1
RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.819
AIL61280.1
ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.819
AIL62780.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.819
AIL62794.1
Extracytoplasmic-function sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.818
AIL63485.1
ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.817
AIL63383.1
ECF subfamily RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.812
Your Current Organism:
Pseudomonas alkylphenolica
NCBI taxonomy Id: 237609
Other names: JCM 16553, KCTC 22206, P. alkylphenolica, Pseudomonas alkylphenolia, Pseudomonas alkylphenolica Mulet et al. 2015, Pseudomonas sp. KL28, strain KL28
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